Protein Info for Atu3108 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 627 PF10022: DUF2264" amino acids 27 to 366 (340 residues), 442.8 bits, see alignment E=9e-137 PF20938: DUF2264_C" amino acids 374 to 591 (218 residues), 143 bits, see alignment E=1.2e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3108)

Predicted SEED Role

"MISCELLANEOUS; Hypothetical/Partial homology"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEP3 at UniProt or InterPro

Protein Sequence (627 amino acids)

>Atu3108 hypothetical protein (Agrobacterium fabrum C58)
MHDKMHDTGTRSDMARFNPLHGNPLKSRADVRRALDDSFAPLLPYFSPGGARVALSGTAA
HFDRAAADLEGFARPLWGIAPLALSGDTFAHWPLLAKGIANGTDPAHPDYWGDVRQKDQR
LVELAAIGFALRLAPQHLWEPLSDAQKENVSRYLLAARERNYADNNWKFFRVMVDMALDH
LGIGFDRSLTETFQKELDDFYIADGWYRDGNYRRIDHYIAFAMHFYGLIYARLSKPDDAY
AKRYRERARLFAGDFASWFDEDGGALAFGRSMTYRFACGGFWAGLAFADEEALPWGEIKG
LYLSHLRWWAEKPIADRDGVLSIGYAYPQLTMSESYNSAGSPYWAFKAFLPLALPESHPF
WQAQETLPKVSTNPHPLVHPGMVMMRAKGNVTALSSGQENLAMRGGPEKYAKFAYSSRYG
FGVEVDERGFRTNGFDNILAFSDDGLHYRVRETNRKVLMAGANLRATWKPFPDVTVETTL
VAAENWHVRLHRITSARALAVAEGGFAINRNDGERDVVSETGGKATADCGTDISAIVDLG
STISRHGVALKALPNTNLINAKTTVPQLRGEIPAGETMLACAVFAGVAGAESERALAAVP
ACPDLEALDRLFADRGVPVSAMAGEPQ