Protein Info for Atu3101 in Agrobacterium fabrum C58

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 105 to 127 (23 residues), see Phobius details amino acids 133 to 150 (18 residues), see Phobius details amino acids 156 to 180 (25 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 232 to 251 (20 residues), see Phobius details amino acids 263 to 286 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 88 to 283 (196 residues), 65.2 bits, see alignment E=3.4e-22

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu3101)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CRL5 at UniProt or InterPro

Protein Sequence (292 amino acids)

>Atu3101 sugar ABC transporter permease (Agrobacterium fabrum C58)
MIENRRKKSLIALSMVTPFIVVFATFFLYPLIEMVRISFTDAPLIGEGNWVGFANYTKLL
SDRLFVTSLKNNGYFVLLTVVPTTVIALTIALAVSRLSGVKQTIAMSLFFLPYVLPVSVV
TEIWAWMLDLQFGILQPVISLIAGKPVAVFKNPYWVMPMVAVVTIWWTNGFNVLLFIAGL
RNIPTELYEAASLDGATTWQRFWRVTWPLLWPVTALVLTLQLILQLKIFDQIYLLSGGGP
FNSSFVLLLKVYREAFQLNNGGYASAVSTVLFLLIVIVSILQFQLLRIRRNS