Protein Info for Atu3065 in Agrobacterium fabrum C58

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 78 to 99 (22 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 130 to 150 (21 residues), see Phobius details amino acids 170 to 191 (22 residues), see Phobius details amino acids 219 to 241 (23 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 276 to 296 (21 residues), see Phobius details amino acids 302 to 323 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 49 to 314 (266 residues), 129.7 bits, see alignment E=5.9e-42

Best Hits

Swiss-Prot: 39% identical to YPHD_ECOLI: Probable ABC transporter permease protein YphD (yphD) from Escherichia coli (strain K12)

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to atu:Atu3065)

MetaCyc: 34% identical to galactofuranose ABC transporter putative membrane subunit YtfT (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-491 [EC: 7.5.2.9]; 7.5.2.9 [EC: 7.5.2.9]

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEM0 at UniProt or InterPro

Protein Sequence (334 amino acids)

>Atu3065 sugar ABC transporter permease (Agrobacterium fabrum C58)
MTVYTERAKGSPLSDFFAENAQVLSIAAFFALCMVFFSVTTDTFLTAGNLLNVVRQAAPI
LIVSVAMTFVIITGGIDLSVGSMVALINAVGAILLAAGYPWPLVVVAMLVLGGGLGLVQG
WFIAYQGIPAFIVTLAGLSILRGVALYITQGYSVPIPDAPGFFYLGRGDFLGMPVPALIG
VVVTVIAYIVLSSTRYGRRVVAVGSNPEAARRVGMPAKWILASVYLAAGVASAIAGLMIA
ARLGSGSSNAAVGFELQVVAAVVLGGTSLMGGRGTILGTVLGTMTIAVIGNGLILMHISP
FFTQIVTGAIILAAIWLNTRIFTANFRLGVKRKG