Protein Info for Atu3063 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF00532: Peripla_BP_1" amino acids 34 to 249 (216 residues), 52.8 bits, see alignment E=6.2e-18 PF13407: Peripla_BP_4" amino acids 35 to 291 (257 residues), 192 bits, see alignment E=2.2e-60 PF13377: Peripla_BP_3" amino acids 160 to 305 (146 residues), 29.9 bits, see alignment E=8.3e-11

Best Hits

KEGG orthology group: K02058, simple sugar transport system substrate-binding protein (inferred from 100% identity to atu:Atu3063)

Predicted SEED Role

"Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)" in subsystem Bacterial Chemotaxis (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEL8 at UniProt or InterPro

Protein Sequence (317 amino acids)

>Atu3063 ABC transporter permease (Agrobacterium fabrum C58)
MPNFKRRYFSAALAATVLAGATLSAGLVQAAEKTIALVQINQQALFFNQMNEGAEKAAKE
AGVKLVIFNANNDPAAQNSAIETYIQQKVDGIAVVAIDVNGIMPAVKQAAAANIPVVAID
AILPEGPQKAQIGVDNGKAGADMGKFFLDYVKSDMGGKAKIGVVGALNSFIQNIRQKGFE
DTIKDKTGITTAGVVDGQNVQDTALSAAENLITGNPDMTAIYATGEPALLGAVAAVESQS
KQKDIKVFGWDLTKQAITGIDAGYVAGVIQQDPAEMGAAAVKALKTVADGGTVEKTIAVP
VTIVTKANVEPYRAVFK