Protein Info for Atu3026 in Agrobacterium fabrum C58

Annotation: short chain dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 PF00106: adh_short" amino acids 8 to 195 (188 residues), 167.5 bits, see alignment E=3.9e-53 PF08659: KR" amino acids 8 to 161 (154 residues), 54.2 bits, see alignment E=2.6e-18 PF13561: adh_short_C2" amino acids 13 to 246 (234 residues), 205.7 bits, see alignment E=1.2e-64

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu3026)

Predicted SEED Role

"Acetoin(diacetyl) reductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEK0 at UniProt or InterPro

Protein Sequence (249 amino acids)

>Atu3026 short chain dehydrogenase (Agrobacterium fabrum C58)
MQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALA
IKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSL
FLTAKTALPKMAKGGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGPKIRV
NAVCPGMISTTFHDTFTKPEVRERVAGATSLKREGSSEDVAGLVAFLASDDAAYVTGACY
DINGGVLFS