Protein Info for Atu3021 in Agrobacterium fabrum C58

Annotation: sugar ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 111.2 bits, see alignment E=9.9e-36 PF17912: OB_MalK" amino acids 235 to 288 (54 residues), 40.5 bits, see alignment 6.5e-14 PF08402: TOBE_2" amino acids 283 to 355 (73 residues), 23.4 bits, see alignment E=8.1e-09

Best Hits

KEGG orthology group: K02023, multiple sugar transport system ATP-binding protein (inferred from 100% identity to atu:Atu3021)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CEJ5 at UniProt or InterPro

Protein Sequence (371 amino acids)

>Atu3021 sugar ABC transporter ATPase (Agrobacterium fabrum C58)
MSAVQINDVVKRYGALEVVHGINLSIQPQEFVVLVGPSGCGKSTTLRMLAGLEDISDGTV
SMDGRVVNKVAPKDRDVAMVFQNYALYPHLSVAENIAFGLRVRGEKRAVVDKAVAEAAQI
LGLTEYLARKPADLSGGQRQRVAMGRAIVRQPKIFLFDEPLSNLDAKLRTHMRAEIKLLH
KRMQATSIYVTHDQVEAMTLADRIVIMNGGHIEQVGSPMEVFLEPANTFVASFIGSPPMN
LLDGTIEKQDGTVKVRLTGGSGQRFSIPDAFAKNAIEGQTVKLGLRPEIMSVEDSDGREV
LHCSIDLVEPLGAEALLHGKADGQPFIAKAETLYGDHALNGVNRLSIDTARVHVFDAATG
RSLKIRDGAQP