Protein Info for Atu2830 in Agrobacterium fabrum C58

Annotation: glucose inhibited division protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 PF02527: GidB" amino acids 13 to 187 (175 residues), 112.7 bits, see alignment E=6.7e-37 TIGR00138: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG" amino acids 17 to 188 (172 residues), 106.7 bits, see alignment E=5.5e-35

Best Hits

Swiss-Prot: 100% identical to RSMG_AGRFC: Ribosomal RNA small subunit methyltransferase G (rsmG) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K03501, ribosomal RNA small subunit methyltransferase G [EC: 2.1.1.170] (inferred from 100% identity to atu:Atu2830)

Predicted SEED Role

"rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.1.1.170

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UBM1 at UniProt or InterPro

Protein Sequence (205 amino acids)

>Atu2830 glucose inhibited division protein (Agrobacterium fabrum C58)
MKINGQSVSRETQERLEHFVELFKKWNKTTNLVAPSTLTELWSRHVADSAQIFQLSPQPK
KWIDLGSGGGFPGVITAIFLAELGDGWVDLVESNNKKAAFLRIALKETGARGAVHPVRIE
TASEIITTCNAVSARALADLDLLFGYIHPWAQNNPNLKAYFNKGRDYDSEVQKAHGRWQF
DLIKHRSAIEADSVVLEISNLVLRR