Protein Info for Atu2758 in Agrobacterium fabrum C58

Annotation: ammonium transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 32 to 54 (23 residues), see Phobius details amino acids 93 to 115 (23 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 154 to 178 (25 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details amino acids 278 to 298 (21 residues), see Phobius details amino acids 310 to 330 (21 residues), see Phobius details amino acids 348 to 369 (22 residues), see Phobius details PF00909: Ammonium_transp" amino acids 1 to 399 (399 residues), 378.2 bits, see alignment E=2.1e-117 TIGR00836: ammonium transporter" amino acids 1 to 399 (399 residues), 412.2 bits, see alignment E=1.1e-127

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 100% identity to agr:AGROH133_09168)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHE1 at UniProt or InterPro

Protein Sequence (401 amino acids)

>Atu2758 ammonium transporter (Agrobacterium fabrum C58)
MYIATILVLFMIIPGLALFYGGLVRTKNMLSVLMQCTVIGAVMMLVWVIYGYSFAFGGGT
GPYFGGFGKLFLSGVSLDSTSATFSQGVVIYEYTFIAFQMTFAAITPALIIGAFAERVKF
SAVILFTILWATFVYFPIAHMVWDANGLIFGMGALDFAGGTVVHINAGIAGLIGAIMVGK
RTGFGKDMMAPHSMTLTLVGAAMLWFGWFGFNAGSNLEASGGAVLATMNTFLATAAAIVS
WSLVESFTRGKASMLGAASGMIAGLVAVTPAAGSVGPMGAIVLGLIVSPICYFFVSVVKN
KFGYDDTADVFGVHGIGGIIGALGTGIFTSPLLGGTGKADFSISSQLWTQFVAVAITIVW
CAVVSAILYKIVDVIVGLRVPVEAEREGLDLATHGEAAYHS