Protein Info for Atu2668 in Agrobacterium fabrum C58

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 PF00106: adh_short" amino acids 12 to 209 (198 residues), 139.2 bits, see alignment E=1.9e-44 PF08659: KR" amino acids 14 to 167 (154 residues), 24 bits, see alignment E=4.8e-09 PF13561: adh_short_C2" amino acids 18 to 207 (190 residues), 94.2 bits, see alignment E=1.4e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2668)

Predicted SEED Role

"oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHI5 at UniProt or InterPro

Protein Sequence (284 amino acids)

>Atu2668 oxidoreductase (Agrobacterium fabrum C58)
MTTIHPAFKEDNVAVITGAASGIGLAAARKFASFGMSVVLVDLDGEKLAAAHADILNVAK
DGEAQIVAIPTDVSKLDELEALERAVIQRFGRVHVLMNNAGIQPGSAIFGPQANWEKIIG
VNLMGVVNGSRVFGQGMITHGEPSLIINTGSKQGITTPPGDPAYNVSKSGVKTFTEALQH
ELRNIPNSAVSAHLLIPGFVFTGLTAHGRTEKPQGAWTGEQTVDFMIESIGRGDFYILCP
DGEVDRPTDEKRILWAAQDIVQNRPPLSRWHTEYSAAFTSFLKN