Protein Info for Atu2616 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1386 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF04357: TamB" amino acids 1038 to 1386 (349 residues), 199.4 bits, see alignment E=5.6e-63

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 100% identity to atu:Atu2616)

Predicted SEED Role

"FIG00986323: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CWM4 at UniProt or InterPro

Protein Sequence (1386 amino acids)

>Atu2616 hypothetical protein (Agrobacterium fabrum C58)
MKTLIRLLKWLGYAALCCVVLVLLAVLFVGFTPMGARIAANQISSLVSTPDQTIEISPPG
GLLTGRLRLDNVTLSDRQGPYARLNQIAVDWSPLSLLAGTFHADHVSAGSIDVERQPLPA
QQTTGKSSGGSSLPIEIVIDNFSFPDISLGQSLLGRAFDLTAEGNLKAAQDDMRLSLTAH
RRNAVDAEVNADVAFLPNENVLKLKAEMKEPEGGLLATLLSLPGTPAVAIDLNGEGPLSS
WTGTLRGNVAGNAVVNVTGRHLLGDDGTRRIEIAGGGQPDLLLPPAFRQLFAGETKLDAN
ATLYPQGRIEIGSSTLETGALLLTASGTVDPNGQNDLAANLIGTAGPVDFRWPLGNGEIQ
ALINGLDLSLKGGADAAHLNTTVSLRSLALPQGRLDDVKLTAESADLNITNRSGTIATVL
SVAQSSFVSPDIDRLVRAPLTIKAPLSLTSSAIGFNGATLESASVGGTLNGSFDLADNRL
TSSVQLFALPATLPPALAEKFDTTIALQGDIDLTIGGRTSIENLVIKSGTIEAAGNVSLE
NDALSADLKGKFPALEKLTPQAKGIADFAIEASGALAAPDFNVTLSSESAILAGRKLEAL
KVNASGKADPAAPQAKFTASGSLDRQKIDANANVVQTENGTAIPELHVAVGRNILNGKLQ
FSQQFLPTGNLSFNFPDLALLAALAAQQADGDIAGDIALSNANGKIAATIKANGGNIRQG
TTTISKLAADISIDDIKALAINGKISADSVNAGTAAISGLNATIGHSGTTTAFDVNGRYD
NAPLVVKGSADTGGSPMTVRVDTFSAAPKGIPVRLEKPSTIAIQNGTARIADLTIITGDG
RVEVNGTAGSTLDIKADIRSLPASLANAFAAGLDAAGSISGTVSAKGAASDPSVDYNLNW
ANAEVAQTRAAGLAALGIKANGRFAGGNLQIDTDVTGQGGMSLSGGGSLGIAGNRPLSMA
FSGRLPFSAVAAQTAAQGLDVDGTAAIDVNISGTASAPVVTGSITTDGTRLTDVRRNLTI
NGLGATIKFDRDRAVISRLTGKLVGGGTISGTGSVGIAGGSGFPADISITLDRAGYNDGT
LVTTVVSGTLTLKGPLLNSPALGGNLTLDRSAITIPEKLPASLTEIDVKHKNAPPKVRAQ
AKALGADQGGSGSSSTINLDLQVNAPSGIFVRGRGIDAELTGNLTIRGTAAVPVISGGFE
MRRGRLEILTRRLDFTTGNITFGGGLVPVLDMKADSTVGSTTVTVSVSGNANDPTFAFSS
APALPQDEVMAQLIFGQSMSKLSALQIARLADAAAQLAGGRSTSLFDKLRSNLGVDDLDI
STDSEGQARVSAGKYLNERTYLELQQSGESGAKAIINLDVGRGVKLRGEAGGNGEGAAGI
FYEKEY