Protein Info for Atu2615 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 641 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF07244: POTRA" amino acids 243 to 314 (72 residues), 35.6 bits, see alignment E=1.3e-12 PF01103: Omp85" amino acids 341 to 641 (301 residues), 216.6 bits, see alignment E=6.6e-68

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2615)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CWM5 at UniProt or InterPro

Protein Sequence (641 amino acids)

>Atu2615 hypothetical protein (Agrobacterium fabrum C58)
MRRTRTNPKTGIAYRKAGTALAVALTFALYPAFARDAFAFKLFGMRLWGSEEPEVEVINP
VKYAVTLDAADADKSLKSSLENSSLLLADKDKPASGDLGLLIKARDDRDRLIAALYENAR
YGGIVNVTVAGKNVDDLPPNPVFDHSTPVPMVITVTPGPKFTLGNVRLEGDVTGRNLDEY
GLIAGGDAGSLAIIRAGNKLIDDLKAEGRPLAKLTKREAVANHATNTVDITMAAEGGPVA
PLGAVTVTGEKTVDGDFIRRYSRLNGGEPYSPEKLRKAADRLRQLGVFSSLTIKEAGTLA
RDGTIPLTIEVSEGKHRYFGVGAQYSTTEGIGLQGYWGHRNLFGQAESLRIEGSVSRIAE
ASSVEGMDYSAGITFTKPGMFNPRTTFKTSLIAKTENPDTYRAKTLTGTAGFAYELNDTD
TAAAGLEVQWADTEDAFGKNEYLTTSIPLEFVRDTRDDKLNPTEGFRASLAAKPSYEALN
GTFFSSFEGSITGYKGLGAEDRLIMAGKLSGGVLVGGSDLQDIPTTRRFFAGGGGSVRGY
SYQEISPYNAAGDATGGRSYVVGSVEARIKVTDTIGLVPFFDAGVVSDGVTPDFSDIRAG
AGIGLRYATPFGPLRLDVAMPLEKYDGGNNFGIYAGIGQSF