Protein Info for Atu2611 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 95 to 120 (26 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details PF14378: PAP2_3" amino acids 54 to 206 (153 residues), 30.5 bits, see alignment E=3.2e-11 PF01569: PAP2" amino acids 99 to 213 (115 residues), 93.7 bits, see alignment E=8.1e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2611)

Predicted SEED Role

"Phosphatidylglycerophosphatase B (EC 3.1.3.27)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 3.1.3.27)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.3.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CWM8 at UniProt or InterPro

Protein Sequence (242 amino acids)

>Atu2611 hypothetical protein (Agrobacterium fabrum C58)
MQEKDKRMLMRRFVVSSGWIFAASLVLVLVFIPFDPRLSETAQALPGRIVTFNRAITDFG
TFRWMLYSTGALAILAYVAARVLQAQTYGGRLRTAWRLLAYFFLTIGTASILVHTLKFLI
GRARPELFLEMGAYSLTPFTGDNLYESFPSGHSTAAGAFFGVFAMLMPRFRWAFLLLALV
IGVSRVIVGAHYPSDVAAGLLLGLWTAMAFAFIFARFEMLFRFDAQGWPQPKNASPPAAE
TR