Protein Info for Atu2579 in Agrobacterium fabrum C58

Annotation: metal dependant beta lactamase protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 PF00753: Lactamase_B" amino acids 45 to 240 (196 residues), 26.1 bits, see alignment E=7.8e-10 PF12706: Lactamase_B_2" amino acids 53 to 252 (200 residues), 68.4 bits, see alignment E=6.8e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2579)

Predicted SEED Role

"Mlr3257 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHM4 at UniProt or InterPro

Protein Sequence (286 amino acids)

>Atu2579 metal dependant beta lactamase protein (Agrobacterium fabrum C58)
MAFDSDTRSRESNRNFRVKIWGARGTLPVSGENFRKYGGNTICIEVRCGDHVLLFDAGSG
LHPAGLALRAEGITDVNLFFSHCHYDHIVGFPYFKPFYNSSNDVAIWSGHLAGSMTTREM
LKDFMSPPWFPVPLEICCAKIATRDFKAGDVLDVHPGLSIRTGMLNHPGNAIGYRLDWEG
KSLAIITDTEHEPSSIDETVLDLIRDVDLFLYDAMFTDEEMGLYRGYGHSSWQQAIRLAK
LADAKNVGFIHHAPSRSDEELDDIEKQAKAEFNGAFAAMDGQVIEI