Protein Info for Atu2577 in Agrobacterium fabrum C58

Annotation: ABC transporter, nucleotide binding/ATPase protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 905 transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 59 to 77 (19 residues), see Phobius details amino acids 86 to 108 (23 residues), see Phobius details amino acids 178 to 204 (27 residues), see Phobius details amino acids 272 to 296 (25 residues), see Phobius details PF00664: ABC_membrane" amino acids 87 to 311 (225 residues), 74.9 bits, see alignment E=8.9e-25 PF00005: ABC_tran" amino acids 386 to 475 (90 residues), 28.3 bits, see alignment E=2.5e-10

Best Hits

KEGG orthology group: K02021, putative ABC transport system ATP-binding protein (inferred from 100% identity to atu:Atu2577)

Predicted SEED Role

"FIG00984639: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHM5 at UniProt or InterPro

Protein Sequence (905 amino acids)

>Atu2577 ABC transporter, nucleotide binding/ATPase protein (Agrobacterium fabrum C58)
MEQSLTRYIWSHTRRQQLFILLIVALSMIPYFLAFDLPKQIVNGPIQGDGFEGANATQLF
MHLTVDIPYWGTVTLFPGIELNRMSMLMGLSLTFLALVIINGLFKYYINTYKGRLGERLL
RRIRFELIDRILRFPPTHFKRVKGAEISSMVKDEVEPLGGFTGDAFVQPALLGGQALSAL
FFILVQNLWLGLIAAFMAAIQVGIIPKMRRRLIELGRQRQLSARQLAGRIGEMVDGIGTI
HAYDTSNFERADASHRLGDIFKIRYDLYQWKFLVKFINNFLAQLTPFFFYALGGYLTLKG
SLDVGQLVAVINAYKELPGPLKELIDWDQARQDVQVKYEQVFEQFNTPNMIDDKVQKLSP
GTVAAITAPLVIANLTLEDDSGSRLLEQASLKIEPGEVIAIVGGSGAEALADAIGRTLWP
TSGKVSINDVDILELPESLTGRRISYVSSDSYFFHASLKDNLLYGLKHAPLAEKNYEGAA
LEHRKWEIREAKMAGNPLIDINSEWIDYASSPAGDGKPENLIQAVLAVLDSVELSQDILE
FALRSSIDPLTDLHLAARIVELRHVLRAELEKENLSGLIAPFELESYNSEATVGENLLFG
TMRDSSQTIRTVIESDYFRSLMRETGLVKTLFEMGYTIAENIVEIFADLPGDHPFFQQLT
FMTPDDIPVYQQMMQRLQGKSFDEANESEKRAMLRLSFFYIEPRQRFGLLSPEIMNRIVE
VRHMFHENLPDSLKNVIEIYDPTKYMSATSLLDNILFGKVSHRYTDASRRITRIVADVMR
KQGVYERVLAVGLDFNLGAGGKRLGPLQRQKLNLARALIRKSDYYVFNRPLPGLDPRQQE
EIVERVITLLKQNNNNPSIVWVLSNAHLSRMFERVIVVHQGLITADGSYETLAEENGTFK
DMVAT