Protein Info for Atu2560 in Agrobacterium fabrum C58

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01266: DAO
  • amino acids 31 to 382 (352 residues), 208.1 bits, E=2.9e-65
• PF00890: FAD_binding_2
  • amino acids 31 to 81 (51 residues), 25.7 bits, 6.5e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2560)

MetaCyc: 40% identical to pipecolate oxidase (Pseudomonas putida)
L-pipecolate oxidase. [EC: 1.5.3.7]

Predicted SEED Role

"FAD dependent oxidoreductase"

MetaCyc Pathways

• L-lysine degradation II (L-pipecolate pathway) (2/9 steps found)
• L-lysine degradation V (2/9 steps found)
• superpathway of L-lysine degradation (10/43 steps found)

KEGG Metabolic Maps

• Lysine degradation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.5.3.7

Sequence Analysis Tools

See A9CHN2 at UniProt or InterPro

Protein Sequence (427 amino acids)

>Atu2560 oxidoreductase (Agrobacterium fabrum C58)
MYNDPRSHGLWEKTAPQPPVTPALQGDAVADVVVVGGGFTGQSAALHLAEGGLDVILLEA
KEIGFGGAGRNVGLINGGMWVMPKELPDVLGETYGERLLDLLGDAPVLVRELVEKHGIPC
EIEKNGTLHCAVGEKGLAEIRERCEQWSARGAPVRVLDADETASYIGSTAYSGALLDSRA
GTIQPLAYVRGLAGAALKAGVRLHTASPVNETGRNGAKWVVKTPEGSVTAKWIVVATEAY
STGPWQIIREEQVYLPYFNFATRPLSDNLQKSILPGRQGCWDTKEILSSFRMDKAGRLVF
GSVGALRGTGTAIHRAWAKRSLKRLFPQLGDTEFECEWYGQIGMTDNAVPRFHKFAENVI
GFSGYNGRGIAPGTAFGKVIAQHILGEIAEADLPLPVTEPKAQAFRAVKEAYYEAGAQIA
HFAGERF