Protein Info for Atu2530 in Agrobacterium fabrum C58

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 PF02771: Acyl-CoA_dh_N" amino acids 32 to 115 (84 residues), 26.1 bits, see alignment E=9.2e-10 PF08028: Acyl-CoA_dh_2" amino acids 249 to 388 (140 residues), 120.1 bits, see alignment E=8e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2530)

MetaCyc: 92% identical to resorcinol 4-hydroxylase (FADH2) (Rhizobium sp. MTP-10005)
R307-RXN [EC: 1.14.14.27]

Predicted SEED Role

"Coenzyme F420-dependent oxidoreductase" in subsystem Anaerobic respiratory reductases

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.14.14.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CWU4 at UniProt or InterPro

Protein Sequence (409 amino acids)

>Atu2530 oxidoreductase (Agrobacterium fabrum C58)
MNDMSHAPLPVQTNPHVRLASRVAGIADLFRSSARQTEEARRVPASHIEALRGIGYFDIV
KPRAFNGKGGDFAELVEANIELSAACASTGWVAGLLSAHQWLLAMFPEEAQADVWGENPD
ALLCGSYAPVKMAEAADGGYRLSGKWAFASGCENAQWSLCAAILPPKGEGKPVPAFLLVP
ASQYVVEDTWHVVGLAGTGSKTLVLDDVFVPEHRVLTFPDATSGCTPGGRYYAEESLFNM
PLLTGIPSCLAAAGVGAAKGALAAYVDHVGGRVTRGAVAGGNNRMAEFPTIQLRVAEAAA
SVDAACEILLRDVSRAQALAQARIEGRAEFTVDDRLLSRRGQSFAVSLSLRAVQALNDST
GGVGLDLANPVQRAWRDANAVGRHISMNWDAVGTMIGQSMLGLEPKGQY