Protein Info for Atu2524 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 774 PF06748: DUF1217" amino acids 61 to 140 (80 residues), 67.9 bits, see alignment E=5.7e-23 amino acids 332 to 406 (75 residues), 34.2 bits, see alignment E=1.4e-12 amino acids 451 to 574 (124 residues), 54.1 bits, see alignment E=1e-18 amino acids 572 to 725 (154 residues), 183.6 bits, see alignment E=1.3e-58

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2524)

Predicted SEED Role

"Flagellar basal-body rod protein FlgF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHP6 at UniProt or InterPro

Protein Sequence (774 amino acids)

>Atu2524 hypothetical protein (Agrobacterium fabrum C58)
MLPAYTTYALYNRNMESSLKRVANDPIISRDAKYYADNIGKVKSLDAFLKDYKLYSYAMK
AHGLEEMTYATAFMKKVLESNLKDPNSFVNKLKDTRYRDFAAAFDFGTIKTEKTVQTKSQ
QDRLVTAYHDTDKQRNEEQKEETRYYNIVIDKVGQVDDIFKNTRLRNYVFKSFGIDPQTF
DYQHLKGVLTSDISKADSYVNSTYKPLLEEWQAKIADLRDQRTKIPSTDKTSLEKNDYLI
NQYNKRINGAAKLFELAATFNFRADGLVNDGTKAQTAVQKRLTNENYVLANPRVTQTGAI
LNRDFFVQAMKDVTDAGQLTANSRLRTMLIVAFNLEDNSGTDQKIQWALRENPADPQSGL
YREKDKGFIDLAKAFNFGTDGKVAAGKAVQSDGQLSTIMNLYFSRYDDKQEAADEKTIKD
YRRYIGLTKNLDDFLSAAPAAVAIRNFALKAFNIGTEESSTFKLKKVFTSDLSNPKSYVY
TLKDDRFLRLAKAFNFDAQGKIGSPRFAQAENEIARISRNYLKEVTRWDKDKKIREKGEK
EVGYYREKMGTLETADQLLADRRLLDFMLVAERIDPKSITTDYLKKIFKSDLKDPKSFAN
TEKDPRFRALAGSFNFDAKGNISATTRQPIQNNRSLMETRDKYVRQKLEERAGEENSGVR
LALYFKRMAGGISSAYDILADKALSEVTRTALGIPAETANAKVDAQAKMIEKRLKIKDLQ
DPKKVEKLVNRFLMTFEANNSGSDPRIALFRQGSASISGNTLATLAQLRSGRRG