Protein Info for Atu2522 in Agrobacterium fabrum C58

Annotation: agrobacterium chromosomal virulence protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF06057: VirJ" amino acids 262 to 453 (192 residues), 306 bits, see alignment E=5.8e-96

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2522)

Predicted SEED Role

"Agrobacterium chromosomal virulence protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHP7 at UniProt or InterPro

Protein Sequence (456 amino acids)

>Atu2522 agrobacterium chromosomal virulence protein B (Agrobacterium fabrum C58)
MMKRNLIGAFIAASTLLSSSVAFSQDKPAYETGMIPADHIMVPDGDIQASIFLISDANGW
TEADETRAKALVEKGAAVVGIDFKEYLKALEADDDECIYMISDIESLSQQIQRTAGTGSY
RLPIVTGIGKGGTLALAMIAQSPVSTVREAVAVDPKAGLPLEKILCTPATKDKVDGETVY
GLTDGALPAPVSVIFTPDADQKGRDHVNALVKLHSDIEVTDVTDKADEVLTQTLSDKVDA
AGDSGNPLGLPITVLEAKPVMDTMAVIYSGDGGWRDLDEEVGSALQKQGVPVIGVDALRY
FWKEKDPKEVAGDLARIIDTYRKEWKVKNVVLIGYSFGADIIPATYNLLPDRVKSSVAQL
SLLGLSNEVDFEISVQGWLGVAGEGKGGKTVDDIAKIDPKLVQCVYGTEEEDEDPCPGLK
AKGVETIGIEGGHHFDEDYEALAKRIVTSLKTRLAK