Protein Info for Atu2412 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein (urea/amide)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 47 to 93 (47 residues), see Phobius details amino acids 106 to 117 (12 residues), see Phobius details amino acids 129 to 153 (25 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 208 to 229 (22 residues), see Phobius details amino acids 257 to 277 (21 residues), see Phobius details amino acids 297 to 319 (23 residues), see Phobius details amino acids 331 to 351 (21 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 42 to 354 (313 residues), 445.1 bits, see alignment E=9.4e-138 PF02653: BPD_transp_2" amino acids 47 to 344 (298 residues), 135.4 bits, see alignment E=1.1e-43

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to atu:Atu2412)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHW1 at UniProt or InterPro

Protein Sequence (392 amino acids)

>Atu2412 ABC transporter, membrane spanning protein (urea/amide) (Agrobacterium fabrum C58)
MITGFLLRALDRRISIAIGIILAIAVLVPASNLLLPEGSAFRIPTYIMSMLGKYLAYALL
ALALDLVWGYCGILSLGHAAFFALGGYAMGMYLMRQIGTRGVYGHPVLPDFMVFLNWKEL
PWFWHGFDMFWFAALMVLVVPGLLAFVFGWFAFRSRVNGVYLSIITQAMTYALLLAFFRN
DMGFGGNNGLTDFKDILGFSVQADGTRAMLFAMTAAMLALSLLIASGIVNSKFGKVLVGV
RDAESRVRFLGFRVENIKLFTFVVSAMMAGVAGALFVPQVGIINPGEFSPANSIEVVVWT
AVGGRGTLIGPIIGALLVNGGKSYFTGAFPEFWLFALGGLFIAVTLFFPKGIVGTIQHYL
AGRREKRVARAAAAAKQPGNDSAATAAQQAAE