Protein Info for Atu2398 in Agrobacterium fabrum C58

Annotation: urease accessory protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 PF02814: UreE_N" amino acids 38 to 97 (60 residues), 50.6 bits, see alignment E=1.1e-17 PF05194: UreE_C" amino acids 104 to 188 (85 residues), 103.1 bits, see alignment E=8.1e-34

Best Hits

Swiss-Prot: 100% identical to UREE_AGRFC: Urease accessory protein UreE (ureE) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K03187, urease accessory protein (inferred from 100% identity to atu:Atu2398)

Predicted SEED Role

"Urease accessory protein UreE" in subsystem Urea decomposition

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UCT5 at UniProt or InterPro

Protein Sequence (191 amino acids)

>Atu2398 urease accessory protein (Agrobacterium fabrum C58)
MQRECASALKSPRLSVKNRLPKTVSETDHPMLRVTSYHPAGTPGDEPSGYVTLAHDQRHL
RRKLLHLQNDEMVMLDLKEAVLFAHGDLLVVENGDLIEVRAADEKLFEIKAKDRLHLIEL
AWHLGNRHLAAQIEEERILILRDHVIRAMLEGLGATVRDVEEPFQPARGAYHAHGGHSHD
HGQGHHHHDHG