Protein Info for Atu2393 in Agrobacterium fabrum C58

Annotation: Acr family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1106 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 331 to 351 (21 residues), see Phobius details amino acids 358 to 375 (18 residues), see Phobius details amino acids 384 to 405 (22 residues), see Phobius details amino acids 429 to 449 (21 residues), see Phobius details amino acids 457 to 479 (23 residues), see Phobius details amino acids 520 to 541 (22 residues), see Phobius details amino acids 876 to 895 (20 residues), see Phobius details amino acids 902 to 922 (21 residues), see Phobius details amino acids 929 to 953 (25 residues), see Phobius details amino acids 974 to 993 (20 residues), see Phobius details amino acids 1005 to 1030 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1031 (1028 residues), 756.9 bits, see alignment E=1.7e-231

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2393)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHW8 at UniProt or InterPro

Protein Sequence (1106 amino acids)

>Atu2393 Acr family transporter (Agrobacterium fabrum C58)
MNFSAWSIRNPIAPLLGFALLMILGMQAFNTLPITRFPNIDVPVVAVTVTQSGASPSELE
MQVTKEIEDAVAAISGVDEIQSTVVDGQSTTTVVFRIEKPTEEAVQDTKDAIDKIRSDLP
ADIEVPVVSKIDVEGQAIQTFAVSSPNMTLEELSWFVDDTIKRSLQGQSGIGKVDRYGGA
DREVRVSLSPEKLDAYGITATEVNSQLRGTNVDLGSGRGQVGGNEQTIRTLGDTRDVSQL
ANTTIALSNGRFVKLSELGTVTDTYQEQKSFSRFNGNPAVTFAVFRSKGASEVSVAETVA
ASLDQVRKNNPDVSIQMVDDAVYFTYGNYKAALDTLIEGAILAVIVVLLFLRNWRATLIA
AVALPLSAIPTFWIMDIMGFSLNLVSFLALTLATGILVDDAIVEIENIARHIKMGKTPYR
AALEAADEIGLAVIATSFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLAVARLIT
PLMAAYLMRAEDAMDDHHDNDGRLMKAYTRMVTATTRKWWARYLTLVGAIAFLVASVMLL
AQVPGSFLPPDDASRVTLSVELPPNATLDETDRTTTQIYHALRDINGVESVFILGGASPK
GDLELRRATVNVLLQHIDHSLLKLVVNKGLGSIPLIGQYLPKVEEKGRTRPQWDVERDIF
AQVRGIPDVRIIKLNDRAERELSFNFLSKNEKDLSDAVGILESRLRASPILANVSSEGAL
PRPELQIRPRKDEIARLGITPQQISQTVRVATIGDIDAQLTKISLDDRQIPIRVQASLDT
RRDLATIRALKIKTASGSLVPLYSVADIDYSEGPSSIKRNDRNRVVSIGSDVPFGTALDT
STAEFKRIVAETKLPASVRLAESGDAKVQGEMQQGFVNAMLLGLMLVLVVLILLFKDVIQ
PFTILFSLPLAIGGVAVALIITQNALSMPVLIGILMLMGIVTKNAILLVDFAIEMRRHGM
ERVHAMVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGIIVSTVLS
LIVVPAFFLIMDDVSRLLAHLFGRFVGKKEVEEEALSNEKLSEIAHENSLALSSLEARVA
SMEKGTGDKASDKGSNILRLPPLAAE