Protein Info for Atu2389 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 89 to 117 (29 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 211 to 232 (22 residues), see Phobius details amino acids 258 to 283 (26 residues), see Phobius details PF00528: BPD_transp_1" amino acids 105 to 287 (183 residues), 88.8 bits, see alignment E=1.9e-29

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to atu:Atu2389)

Predicted SEED Role

"Pyrimidine ABC transporter, transmembrane component 1" in subsystem Pyrimidine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CX64 at UniProt or InterPro

Protein Sequence (291 amino acids)

>Atu2389 ABC transporter, membrane spanning protein (Agrobacterium fabrum C58)
MTLLRHRILPILTVLLAILILWHLAVIYLNMPFARDQATRAGQTPGFFQLLPQTFAQERP
VLPAPHQIAAELWDTTVNKAITSKRSLIYHAGITLSATLLGFAIGAVLGILLAVAIIHNR
AMDRSVMPWIIASQTIPILAIAPMIIVVLNSIGISGLLPKALISTYLSFFPIVVGMVKGL
RSPETLQLDLMHTYNASPAQIFWKLRWPSALPYLFTSLKIAIAIALVGAIVGELPTGAVA
GLGARLLSGSYYGQTVQIWAALFMAAGVAALLVSIIGIAHAAVLKRMGARP