Protein Info for Atu2334 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 24 to 26 (3 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 97 to 118 (22 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 186 to 205 (20 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 252 to 268 (17 residues), see Phobius details amino acids 274 to 292 (19 residues), see Phobius details PF00892: EamA" amino acids 11 to 143 (133 residues), 81.2 bits, see alignment E=4.5e-27 amino acids 157 to 290 (134 residues), 51.7 bits, see alignment E=5.7e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2334)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CHZ7 at UniProt or InterPro

Protein Sequence (302 amino acids)

>Atu2334 hypothetical protein (Agrobacterium fabrum C58)
MTPQNTIARELLFLALLSTLWAASYTFIKIGVETIPPLTFIAARTLIAGLLLLVVIRLRG
LRLPRDPATWRLFFVQACINSVLPFTLIAWAEQSIDAGLAVILNATTPIFTFLLTALVIR
HETVSGRKLFGTIAGMTGVCLIIGVEALGGAGEAIWSQLAVLTAAFSYACAAIFSKNFKG
LDPVMPAAGSLICGAVLLLPVSLIVDRPWTLSPSAASLTALVCLSVFSTALAFMIYFRLM
QTLGSVGTTSQAYLRVPVGVAIGMVFLGEVPTSAMWVGLVCVIAGVLAMTLPSRRRPATQ
GG