Protein Info for Atu2241 in Agrobacterium fabrum C58

Annotation: ABC transporter, nucleotide binding/ATPase protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 627 transmembrane" amino acids 44 to 65 (22 residues), see Phobius details amino acids 85 to 110 (26 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 193 to 212 (20 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details amino acids 307 to 327 (21 residues), see Phobius details PF00664: ABC_membrane" amino acids 45 to 316 (272 residues), 48.1 bits, see alignment E=1.3e-16 PF00005: ABC_tran" amino acids 387 to 540 (154 residues), 120.7 bits, see alignment E=7.2e-39

Best Hits

Swiss-Prot: 46% identical to Y1051_HAEIN: Uncharacterized ABC transporter ATP-binding protein HI_1051 (HI_1051) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K06147, ATP-binding cassette, subfamily B, bacterial (inferred from 100% identity to atu:Atu2241)

Predicted SEED Role

"ATP-binding protein of ABC transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CXJ4 at UniProt or InterPro

Protein Sequence (627 amino acids)

>Atu2241 ABC transporter, nucleotide binding/ATPase protein (Agrobacterium fabrum C58)
MVITRIFEYFENWIKPFARKDDLRPPESTFAFIWFYISQAKAPFFAMLVLGGLTAAIEAA
LFWFVGRLVDILSTVKPDEGWAGLLAAHGGELVGMLVLIGVVRFIVTMITALVDQQIITP
GFYNLVRWQSYMHVARQSLTFFQNDFSGRIVTKVWSGGQAAGDLVTSLMESVWFVGIYSV
SMLFLIGGLDWRLAVLVVVWVAIFSLLARYFVPRIRHHSKETAEAASMLSGRMVDAYSNI
QTLRLFGRDDANDRYMRQGFDIFQTSTMKFTRFITGVRASMALLSGVMITSMAALCIDLW
LSGKISSGAVAFTLALVLRLNFLLGRLMTQFNGIMRNFGTVQNAAELISQPIGLVDAPDA
AVLEVKKPSIRFENVSFHYGRANGVIDNLNLEIRAGEKVGIVGRSGAGKSTLVNLLLRFY
DVEKGRILIDGQDIARVSQESLRAHIGMVTQDTSLLHRSIRDNIMFGRTDATEAQLIEAT
RRAKADDFITRLEDQRGRTGFDAHVGERGVKLSGGQRQRIAIARVMLKDAPILVLDEATS
ALDSEVEAAIQSNLDELMQGKTVLAIAHRLSTIAALDRLIVMDQGLIVEEGSHAELVAQG
GLYSELWARQSGGFLDAEDVKRRDEAS