Protein Info for Atu2237 in Agrobacterium fabrum C58
Annotation: cytochrome c1
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00413, ubiquinol-cytochrome c reductase cytochrome c1 subunit [EC: 1.10.2.2] (inferred from 100% identity to atu:Atu2237)Predicted SEED Role
"ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit" in subsystem Ubiquinone Menaquinone-cytochrome c reductase complexes
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.10.2.2
Use Curated BLAST to search for 1.10.2.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q7CXJ8 at UniProt or InterPro
Protein Sequence (294 amino acids)
>Atu2237 cytochrome c1 (Agrobacterium fabrum C58) MKTLFTSIALFAAISCSAAAFAAEESHDLATKAEHAIAGGHFPIIKPEEQSWSFAGPFGK YDKGQLQRGLKVYKEVCSACHSMSLVSFRTLGDLGYSDEQVKAFAAEYEVQDGPNAEGEM YNRKAVPSDHFPSPFPNHEAAAAANGGAAPPDMSLLAKARGVERGFPQFIIDMIPIVGGY QEGGPDYIHALLTGYQEPPAGVEISEGTHFNPYFVSAAALKMAPPISADQVTYDDGAPQT VDQYSKDVAAFLMWAAEPHLEARKRTGFMVMVFLFIFTALIYLTKKSVYANKEH