Protein Info for Atu2010 in Agrobacterium fabrum C58

Annotation: GGDEF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 579 signal peptide" amino acids 1 to 14 (14 residues), see Phobius details transmembrane" amino acids 15 to 29 (15 residues), see Phobius details amino acids 315 to 336 (22 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 409 to 569 (161 residues), 154.9 bits, see alignment E=7.8e-50 PF00990: GGDEF" amino acids 412 to 567 (156 residues), 146.2 bits, see alignment E=3.9e-47

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu2010)

Predicted SEED Role

"FIG00365119: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CY31 at UniProt or InterPro

Protein Sequence (579 amino acids)

>Atu2010 GGDEF family protein (Agrobacterium fabrum C58)
MRASIQKIQLTGTIVIAVSAILLATLAALPSVSNYLRYRTNAQQLNRFETALQSAWLVSA
ERGPANNLMAATSADASLVERLAVARKATDDKLSQVETSFAEEIKAQPRLAKSLAETRQK
LAQSREAVDAVAALPAEARSYSAMANAIQSMFTAADSVNLLRGKAARAIITKTPDVAIDI
AMTGTAGVMRDRIGRLGSYVVMSLQANRQDRLSYRAKFDTEMQSVMLVKSSLWNYTAAYL
STPRLDAAFRDFDTYYFGQSLRYAQNTIAIVVPSALPSIRDFSENYIQGMRSSDQLRDLI
LAETRARIEKNKQQALIYGLASLFLALIAVMVLLRLTSVYKTALFQPMQSVLAQISAIAA
GDLSEAQRQTGVAPEVTKMFQELDFLREQLRQKGEMEEQQRALSEQLRTLSETDALTGVF
NRRALEKSVRAILSGDEDYQSLGVMIIDIDHFKSINDRYGHAMGDLALQKTASLLKGALR
KTDILARYGGEEFVVVLQDVSHATATATADRLRRLIEVQTFDEQTGLSLTASFGVVWQEA
RAINSWDELIAIADDRLYEAKRAGRNRVWATYFPKVANG