Protein Info for Atu1977 in Agrobacterium fabrum C58

Annotation: amine oxidase, flavin-containing

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 457 transmembrane" amino acids 15 to 31 (17 residues), see Phobius details PF01266: DAO" amino acids 14 to 50 (37 residues), 30.4 bits, see alignment 6.2e-11 PF13450: NAD_binding_8" amino acids 17 to 86 (70 residues), 60.6 bits, see alignment E=2.9e-20 PF01593: Amino_oxidase" amino acids 22 to 310 (289 residues), 87.2 bits, see alignment E=3.1e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1977)

Predicted SEED Role

"COG2907: Amine oxidase, flavin-containing"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIF6 at UniProt or InterPro

Protein Sequence (457 amino acids)

>Atu1977 amine oxidase, flavin-containing (Agrobacterium fabrum C58)
MTDTEARQKDSRRRIAIVGTGISGLSAAWLLSKRHDVTVFEAADRVGGHSNTVRFDTDNG
PVHVDTGFIVYNEWTYPNLTALFKTLDVPTAASNMSFAISLDNGDFEYSGGTGLGLLAQK
RNVLRPRFWAMLADLLRFYRNAPRDLHLMGNISLDEYLTHNRYGSAFRDDHLYPMAAAIW
STPAMEVGRYPAAHFIKFCRNHGLLLLRNRPVWRTVVGGSREYVKRITAPFAERIRLSTP
VMRIRRLPHGVELTMADGKTARFDDVVIATHADQALDMLVDASPAEQRILGAFGYTKNRA
VLHTDSSFMPRRRAAWSSWNYVADTHIEAGQPSITYWMNRLQPLGEIPDTFVTLNPVREP
DQGKIIAEETYHHPVFDAGTERMRQELWALQGLRNSWFCGAYFGSGFHEDGLQAGLAVAE
DLGGVTRPWKVADDSSRIIRLNLKTIATDTELMEATA