Protein Info for Atu1796 in Agrobacterium fabrum C58

Annotation: cytochrome c-type biogenesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 transmembrane" amino acids 24 to 47 (24 residues), see Phobius details amino acids 59 to 82 (24 residues), see Phobius details amino acids 103 to 128 (26 residues), see Phobius details amino acids 141 to 167 (27 residues), see Phobius details amino acids 179 to 203 (25 residues), see Phobius details PF02683: DsbD" amino acids 20 to 191 (172 residues), 161.4 bits, see alignment E=1.4e-51

Best Hits

KEGG orthology group: K06196, cytochrome c-type biogenesis protein (inferred from 100% identity to atu:Atu1796)

Predicted SEED Role

"Cytochrome c-type biogenesis protein CcdA (DsbD analog)" in subsystem Biogenesis of c-type cytochromes or Experimental tye or Periplasmic disulfide interchange or Sulfur oxidation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CYI1 at UniProt or InterPro

Protein Sequence (214 amino acids)

>Atu1796 cytochrome c-type biogenesis protein (Agrobacterium fabrum C58)
MAGVSVEQFRTEETAPRPEVRRAVLFSAFCFTLGFATVFVALGAGASTIGTLLRQNLDIL
AKIGGFIIILMGLNFLGVFRIGLFSREARFQGAGKPATLSGAYVMGLAFAFGWTPCIGPV
LGAILGVAASRDTVGDGAMLLAVYSLGLAVPFWIAAAFSGSFMRFLVRFRRHLGLVEKLL
GVLLVLTGLAFMSGFITNVAIWFQETFPILMQIG