Protein Info for Atu1776 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details amino acids 83 to 101 (19 residues), see Phobius details amino acids 107 to 125 (19 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 194 to 213 (20 residues), see Phobius details amino acids 219 to 237 (19 residues), see Phobius details PF00892: EamA" amino acids 20 to 97 (78 residues), 35.2 bits, see alignment E=7e-13 amino acids 107 to 235 (129 residues), 41.8 bits, see alignment E=6.4e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1776)

Predicted SEED Role

"Membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CYK0 at UniProt or InterPro

Protein Sequence (267 amino acids)

>Atu1776 hypothetical protein (Agrobacterium fabrum C58)
MFGLVALPLIRKRNDRWVDIVKTTNRPLWIIRFFSAGIGAVGSVTAFTHLSMAEAFALIF
LLPSFVTIMSVVFLKEQVGIRRWSAVIIGFLGVLIILRPGFRELGVGHLGAIVAGFGGAL
SIVIFRAMGPSEKNVSLYGAGVLGCLAISGVAMIPTFVMPGGEQWLLLAGYGLLGALGNV
LVMYAAQYAPAAMIGPTQYSQMLWAILFGYLIFGDRIDGWMLIGIALIVGSGLLTLIREK
QRKVPLPASIAATDQNVAVGITPEDGH