Protein Info for Atu1717 in Agrobacterium fabrum C58

Annotation: long-chain fatty acid transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF03349: Toluene_X" amino acids 121 to 335 (215 residues), 60.1 bits, see alignment E=1.5e-20

Best Hits

KEGG orthology group: K06076, long-chain fatty acid transport protein (inferred from 100% identity to atu:Atu1717)

Predicted SEED Role

"Long-chain fatty acid transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CYP2 at UniProt or InterPro

Protein Sequence (425 amino acids)

>Atu1717 long-chain fatty acid transport protein (Agrobacterium fabrum C58)
MAKTAIFRGAVCFAVSIAAVTPSLAGGLERGGYNIDLLFDPSDYVLDSSATFVAPQRKVE
NARDNPVKSGGPLPASWSTTADDSENYWSTRVGAKAAIGDFGDCMFDYSQPWGADLNPGI
WQGSSYNIETKVKSHNYATTCRVKFDLGKGDFSIIGGGFYQELSGYKYRQVLSPTFLTSI
NVPTSIYNGTGKLDMEGDGWGWRAGLAYEIPEIAFRTSLVYNSAVDVDLTGNVTLTNLPV
GLNQISGRVTPVYGNVSMPDSIEWKVQSGIAPGWLAFGSVKWTDWSQIQTIPFCAVGSPT
CVAGTQSAINTLDLFYRDGWTISGGIGHKFNEQWSGAVSLTWDRGTSTVIGTQTDTWMVG
TQLVYSPNKNLEFKIAGALGLLTSGSSSIGGAPCGPLGARCGDEAGYTFGNDLVAAISTG
VKVKF