Protein Info for Atu1672 in Agrobacterium fabrum C58

Annotation: long-chain fatty acid-CoA ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF00501: AMP-binding" amino acids 13 to 358 (346 residues), 276 bits, see alignment E=4.7e-86 PF13193: AMP-binding_C" amino acids 419 to 493 (75 residues), 43.1 bits, see alignment E=6.6e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1672)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIS6 at UniProt or InterPro

Protein Sequence (510 amino acids)

>Atu1672 long-chain fatty acid-CoA ligase (Agrobacterium fabrum C58)
MTPHFLLHHLLAARAASEDQALVHKEQSLTYREFAEAAAHCAAALHEAGTERGDRVVIYL
PRGFEECWSIFGVSMASGVFVPVNALLKAQQIRHIVTDCGAKIVISSMAMMDELKAALTD
LPDITILLAEEITARKSAPARPSAAIGEDLAAILYTSGSTGSPKGVMLSHRNLLAGARIV
RTYLDITGKDRILSLLPFSFDYGLNQLLTAVEQGATTIISTFRLGDEIVRDLRDQAITGL
AGVPTIWAILTRAAPLLAKTPLPHLRYLTNSGGRVPQETVKALREKLPDTKIYLMYGLTE
AFRSTFLPPDEIDRRPTSIGKAIPECEIFIVTDKGQRAKPGEPGILVHRGPTVSLGYWNR
PEDTAKVLRPHPFIPAARGGETVCYSGDLAVEDEDGFFSFVARNDAMIKSSGYRISPTEV
EESLMSTGLFREVAVIGLPDPFAGEKVHAVATAASETIDVSAALKKAAEMLAPFMIPRAI
ELVERLPITANGKVDYRALVRERTDNGAHG