Protein Info for Atu1669 in Agrobacterium fabrum C58

Annotation: glucose inhibited division protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 TIGR00137: tRNA:m(5)U-54 methyltransferase" amino acids 8 to 429 (422 residues), 539.3 bits, see alignment E=3.4e-166 PF01134: GIDA" amino acids 9 to 380 (372 residues), 333.5 bits, see alignment E=9.8e-104

Best Hits

Swiss-Prot: 100% identical to TRMFO_AGRFC: Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO (trmFO) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K04094, glucose inhibited division protein Gid (inferred from 100% identity to atu:Atu1669)

Predicted SEED Role

"tRNA:m(5)U-54 MTase gid" in subsystem Conserved gene cluster associated with Met-tRNA formyltransferase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UET6 at UniProt or InterPro

Protein Sequence (481 amino acids)

>Atu1669 glucose inhibited division protein (Agrobacterium fabrum C58)
MQDKTHSPIHVVGGGLAGSEAAWQIAESGVPVILHEMRGVRGTDAHKGDTLAELVCSNSF
RSDDATANAVGVIHAEMRLAGSLIIACADKHQVPAGGALAVDRDGFSQAVTDMLENHPLV
TVVREEVTGLPPKEWGSTVIATGPLTSPDLAAAVQAETGEDALAFFDAIAPILHRDSINM
DICWYQSRYDKVGPGGTGKDYINCPMDEEQYNVFIDALIAGDTVGFKEWEGTPYFDGCLP
IEIMAERGRQTLRHGPMKPMGLTNAHNPTVKAYAVVQLRQDNALGTLYNMVGFQTKLKYS
VQADVFRMIPGLENAEFARLGGLHRNTYIDSPILLDRSLRLKSRPDLRFAGQITGCEGYV
ESASVGLLAGRFAAAERKGEAPSLPPATTALGSLLNHITGGHLSSDDEPGKRSFQPMNIN
FGLFPELEPGSIVKPDGVKRFRGKDKTIMKRQLVAARALKDCAAWLGVERVATEQESDAT
P