Protein Info for Atu1607 in Agrobacterium fabrum C58

Annotation: DNA repair protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 TIGR00608: DNA repair protein RadC" amino acids 68 to 275 (208 residues), 222.3 bits, see alignment E=3.3e-70 PF04002: RadC" amino acids 160 to 276 (117 residues), 148.9 bits, see alignment E=3.3e-48

Best Hits

Swiss-Prot: 100% identical to Y1607_AGRFC: UPF0758 protein Atu1607 (Atu1607) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K03630, DNA repair protein RadC (inferred from 100% identity to atu:Atu1607)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UEZ6 at UniProt or InterPro

Protein Sequence (280 amino acids)

>Atu1607 DNA repair protein (Agrobacterium fabrum C58)
MAKRPALPSADLSPTSGFEAGEGDLFNGADERGFFAEPRSAPKKAARAVTATEQEADAAH
YHGHRDRLRTRYRDGGDAALADYELLELLLFRLIPRRDTKPIAKALIARFGTLGSVLGAP
LPLLQEVKGVGEAVALDLKLVASVSQRMLKSEIRNKQVLGSWSSVIDYCHAAMAHETREQ
FRILFLDKRNVLIADEVQGQGTVDHTPVYPREIVRRALELSSTALILIHNHPSGDPTPSR
ADIEMTKTIIDTAKPLGITVHDHIIIGKDGHASFKGLRLI