Protein Info for Atu1579 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein (amino acid)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 115 to 133 (19 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 173 to 199 (27 residues), see Phobius details amino acids 211 to 236 (26 residues), see Phobius details amino acids 249 to 267 (19 residues), see Phobius details amino acids 302 to 317 (16 residues), see Phobius details amino acids 320 to 338 (19 residues), see Phobius details amino acids 348 to 369 (22 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 171 to 269 (99 residues), 75.3 bits, see alignment E=2.3e-25 PF00528: BPD_transp_1" amino acids 191 to 369 (179 residues), 78.9 bits, see alignment E=2.1e-26

Best Hits

Swiss-Prot: 72% identical to AAPM_RHIL3: General L-amino acid transport system permease protein AapM (aapM) from Rhizobium leguminosarum bv. viciae (strain 3841)

KEGG orthology group: K09971, general L-amino acid transport system permease protein (inferred from 100% identity to atu:Atu1579)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIW6 at UniProt or InterPro

Protein Sequence (385 amino acids)

>Atu1579 ABC transporter, membrane spanning protein (amino acid) (Agrobacterium fabrum C58)
MTISNHAFVRQTIEDARPAPSSAVGFGHWLRTKLFATPKDTVLTVIALALLAYLVPPIIK
WLFIDAVWTGSDRFACLTVSQGGALPDGQSGACWAFVSAKLGQFVFGRYPIDERWRPILV
MVTFAILLVPMLIPKAPFKRLNALALFIILPFIAFFLLIGGVFGLPKVETQLWGGLMVTL
ILSFFGITVSLPFGILLALGRRSNLPVIKMLCVLFIEVIRGIPLITVLFFASIMLPLFLP
DGWTFDKFLRALVGVSLFSSAYMAEVIRGGLQAIPKGQYEGADSLGLNYWQKTRLIVLPQ
ALKLVIPGIVNTFIGLFKDTSLVSIIGMFDLLGIVTLNQADANWATPVTAMTGYIFAGFV
FWIFCFGMSRYSLFMERHLDTGHKR