Protein Info for Atu1546 in Agrobacterium fabrum C58

Annotation: transcriptional regulator, MerR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 PF13411: MerR_1" amino acids 5 to 69 (65 residues), 61.2 bits, see alignment E=1.3e-20 PF00376: MerR" amino acids 6 to 40 (35 residues), 44.3 bits, see alignment E=1.9e-15 PF09278: MerR-DNA-bind" amino acids 49 to 112 (64 residues), 49.7 bits, see alignment E=6.8e-17

Best Hits

KEGG orthology group: None (inferred from 99% identity to agr:AGROH133_06300)

Predicted SEED Role

"Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family" in subsystem HMG CoA Synthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CIY1 at UniProt or InterPro

Protein Sequence (128 amino acids)

>Atu1546 transcriptional regulator, MerR family (Agrobacterium fabrum C58)
MDKYYSITELTREFGVSTRTLRFYEDEGLIHPERRGRTRLFRSADRRLIQEILRGRRIGF
TIAEIREIIHVYKEPPGESGQLVLLMKKVDEKRADLRQKRKDIEETLAELDNVEEACLTR
LAEIGVGT