Protein Info for Atu1483 in Agrobacterium fabrum C58

Annotation: cytochrome b561

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 transmembrane" amino acids 25 to 49 (25 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details PF01292: Ni_hydr_CYTB" amino acids 25 to 198 (174 residues), 104 bits, see alignment E=4.3e-34

Best Hits

KEGG orthology group: K12262, cytochrome b561 (inferred from 100% identity to atu:Atu1483)

Predicted SEED Role

"Cytochrome b561"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJ08 at UniProt or InterPro

Protein Sequence (214 amino acids)

>Atu1483 cytochrome b561 (Agrobacterium fabrum C58)
MQDFGDNSGRAPAAGRSWRNTPSSFGVVAIAFHWTIAVLFVAQLALGYLMSRDSIDPVLQ
FNFFQYHKSIGFLVLALAVPRCLWSVFSRKPRAVDGEGPVSRFAARVAHSALLFLTLAVP
LAGWAVASTSPLQIPSYVFDLVVVPGLPMTISDQAEAFWSDVHATLAYLAAVIVLLHVIA
ALWHHFIRRDPTLRRMLPLPDTTDNSRREISSGQ