Protein Info for Atu1459 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 62 to 85 (24 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 184 to 203 (20 residues), see Phobius details amino acids 235 to 253 (19 residues), see Phobius details amino acids 272 to 292 (21 residues), see Phobius details amino acids 299 to 319 (21 residues), see Phobius details amino acids 325 to 348 (24 residues), see Phobius details amino acids 360 to 384 (25 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details PF12832: MFS_1_like" amino acids 32 to 384 (353 residues), 57.6 bits, see alignment E=1.2e-19 PF07690: MFS_1" amino acids 33 to 308 (276 residues), 34.1 bits, see alignment E=1.5e-12 amino acids 240 to 418 (179 residues), 36 bits, see alignment E=4e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1459)

Predicted SEED Role

"MFS transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CZ73 at UniProt or InterPro

Protein Sequence (425 amino acids)

>Atu1459 MFS permease (Agrobacterium fabrum C58)
MTTIGVSAPHGGLPSGGLPRSGGISDRTLFALAALNFFLADARDGLGPFLDAFLATQGWS
SLSLGMIATVGGLVGLLATPLCGALVDGTTWKRMLIAIPVVLVTIGALITLIFPDAWIVW
TGQIMTAVVGAVVGPALAGLTLGLVGERLFSNQISRNEFWNHGGNFASLFATYVVVTFFG
MNGIIGLMLLTAAGALVATAAIDPARIDHKVARGLAEDKGEPGPSGINVLLHERGLIFLA
IILLVFHFGNAPMGRLIAQDFAIELQTPFRTTAIITGVAQFAMIFVAAMAPWLIRRFGLS
TVFIVALAALPIRGLLASAFTDFWVIFPVQFLDGVGAGLLGIVTPVAVERILKGTGRFNV
GLASVMMVQGIGASLSNVVAGWLVTKGGYSLSHLVGGGIAAIAIGLFLLYRNEIAPKQDD
DGASR