Protein Info for Atu1422 in Agrobacterium fabrum C58

Annotation: transcriptional regulator, MarR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 PF12802: MarR_2" amino acids 34 to 93 (60 residues), 42.8 bits, see alignment E=4.6e-15 PF01047: MarR" amino acids 38 to 93 (56 residues), 46.4 bits, see alignment E=2.9e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1422)

Predicted SEED Role

"Transcriptional regulator, MarR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJ34 at UniProt or InterPro

Protein Sequence (151 amino acids)

>Atu1422 transcriptional regulator, MarR family (Agrobacterium fabrum C58)
MDVNIDRLETALGFLIRLAQLKTYDDFFTALGESGMRPGEFSVLFVIMHNPGIRQTALGQ
RLMIKRAHMTKLIRAFEDRNLVTRRVPDDDRRAIELTLTAEGVAHVRKESEWFFSHEATL
GAGLTNAEHDQFIVLLHKFLGMNLGGTGREY