Protein Info for Atu1412 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 transmembrane" amino acids 18 to 39 (22 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 92 to 113 (22 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details amino acids 193 to 216 (24 residues), see Phobius details amino acids 246 to 272 (27 residues), see Phobius details amino acids 283 to 311 (29 residues), see Phobius details amino acids 321 to 339 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 11 to 330 (320 residues), 69.3 bits, see alignment E=1.5e-23

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 100% identity to atu:Atu1412)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJ40 at UniProt or InterPro

Protein Sequence (344 amino acids)

>Atu1412 ABC transporter, membrane spanning protein (Agrobacterium fabrum C58)
MDATIATFLIQDGVTNGAIYALLGLAIVLVFSVTRVIFIPQGEFVAHGALTLALLDAGRV
PGTLNLLLCMGVVALVLDLWAMRRDMRLPRLLQALAVNLALPGAIYGLVAILAPMQLPSF
LRAMITIAIIAPMGYYVYRIAYRPLSDASVLVLLIASVGVHLALMGLGLAFFGPEGLRAA
ALSDGGFTLGPMLVTAQSIFIYLATILVMIGLYLFFEKTLLGKALKATAINRLGARLVGV
RTELTGVTAFVLAAAIAAISGVLIGPITTIFYDTGFLIGLKGFVAAILGGMASFPVTAVA
AVGVGLIEAFASFFASDFKEIIVFGLIVPVLIWLSFGASHHEEE