Protein Info for Atu1411 in Agrobacterium fabrum C58

Annotation: ABC transporter, nucleotide binding/ATPase protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 transmembrane" amino acids 7 to 25 (19 residues), see Phobius details amino acids 29 to 29 (1 residues), see Phobius details amino acids 32 to 53 (22 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 111 to 127 (17 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 207 to 225 (19 residues), see Phobius details amino acids 244 to 269 (26 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details PF02653: BPD_transp_2" amino acids 31 to 300 (270 residues), 132.3 bits, see alignment E=2.9e-42 PF00005: ABC_tran" amino acids 358 to 517 (160 residues), 106.3 bits, see alignment E=3e-34 PF12399: BCA_ABC_TP_C" amino acids 566 to 589 (24 residues), 42.2 bits, see alignment (E = 7.2e-15)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to atu:Atu1411)

Predicted SEED Role

"ABC-type branched-chain amino acid transport systems, ATPase component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJ41 at UniProt or InterPro

Protein Sequence (590 amino acids)

>Atu1411 ABC transporter, nucleotide binding/ATPase protein (Agrobacterium fabrum C58)
MTLGKHLYPAVAALFLVAIFPLLPVPPFWVTLANNIGLASLVAIGLVLLTGVGGMTSFGQ
AAFCGFGAYTTAVLTSAYGFSPWLTLPLSLLVGAVVALPLGLMTVRLSGHYLPLGTIAWG
LAIYYLFGRIELLGRYDGISGIPPLSLGGEALMSSSSIYYIIWIFVIAVAIGAQNLLDSR
VGRGIRALRGGSQAAEAFGVNIERAKLTVFVFAAVVAALSGWLYAHMQRSINPTPFGLDM
GITYMLMAVVGGSGRVVGAIFGASVVLVLKEVLQRVLPGLLGTSVNFEMIVFGVLLVLIL
QLSRDGLWPLLERYLPARPPRTIRRDGEALDKRPMPQTGSPLVRVDRVRKAFGGLTAVND
VSFDIKAGQIIGLIGPNGAGKSTTFNLITGILNLSGGEVTYQGQRLSGLNPRLIARRGIA
RTFQHAKVLPTMSVLENVALGAHLRGNAGMFRSFFRLERRQEQALLAEAADQLDRVGLGA
HRDRPAGDLALGQIRILEIARALCLNPTLLLLDEPAAGLRHGEKQELADLLKKLRAEGVS
VLLVEHDMGFVMGLVDHIVVLDFGTLIAEGKPADIRQHPAVIAAYLGGAA