Protein Info for Atu1393 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 809 transmembrane" amino acids 55 to 74 (20 residues), see Phobius details amino acids 79 to 97 (19 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 302 to 328 (27 residues), see Phobius details amino acids 343 to 365 (23 residues), see Phobius details amino acids 375 to 401 (27 residues), see Phobius details amino acids 410 to 428 (19 residues), see Phobius details amino acids 449 to 474 (26 residues), see Phobius details amino acids 487 to 512 (26 residues), see Phobius details amino acids 523 to 542 (20 residues), see Phobius details amino acids 551 to 568 (18 residues), see Phobius details amino acids 573 to 591 (19 residues), see Phobius details PF13567: DUF4131" amino acids 79 to 233 (155 residues), 46.9 bits, see alignment E=2.5e-16 PF03772: Competence" amino acids 282 to 570 (289 residues), 167.3 bits, see alignment E=4.5e-53 TIGR00360: ComEC/Rec2-related protein" amino acids 302 to 503 (202 residues), 63.9 bits, see alignment E=1.1e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1393)

Predicted SEED Role

"DNA internalization-related competence protein ComEC/Rec2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CZC9 at UniProt or InterPro

Protein Sequence (809 amino acids)

>Atu1393 hypothetical protein (Agrobacterium fabrum C58)
MQGGLPRTADILSPLRRTGEVATYDLPALVSRPKPQAAVIQKITACLAEERAFGHDFLFV
PVFIGCGAILWFSLDAAPSLPLLVVLFLLAAGLAFATRYRSTLAATACSIVALLLLGMLF
AEFETRRAGTVVLDTPVTTTLSGTVIRREVDARGDWRYVVQLAATEAPTVSRPPGKVSLL
ARGGGEPAALGATIRGKARLSLPSGPALPGLNDFAFASYFKGIGATGFFYKPPQTVTAPD
IDAKKDWLEWADMRLYGLRTAIAERIRNTIGGDAGAFAASIVTDERQAISAGTMEALRLS
GLAHIVAISGLNMALASGIFFVGLRLAFSLFPAFAQRWPVKKMSAFAALLMTLAYYLISG
FAVSAERAWLMTSVMLIAVLFDQPSLSLRNVALSALVILALSPSEIMGPSFQMSFAATIA
LVAAYAAWSRWRTDRERLFIGRKPAWMTVAGTAGAVIGGVVTTSLIGGLSTAIYSVEHFQ
RVTTYGLFANLAAMPLMSLVVMPFGLIAMLLMPFGLDAPFLKVMGYGMALVIEVAQEVAS
WGGSAATGRPHGWFIGVASVGFLLLTLLRTRLALLGVPPLLLAFGLSGAVAQRSLPDLLI
HEEGKLVALLDEGRVYTTKTRPQGFIYEQWQRALLLPEKPLSPVLLKTGVPATTIALSAK
SKLAPEDMKAVAREMVTTLRDAAPGVFTCRTGIWCAARAKSGEFIIVLEDGRFAGKACDI
ADIVIVSRRTSFTQCRSGALLLNRDILRRIGSVEINFAGSDQAGVVGRMRAATAGTDRPW
SDHRFYDWKSGRFDHDVPEAVTGLLTASQ