Protein Info for Atu1239 in Agrobacterium fabrum C58

Annotation: exopolysaccharide production protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 753 transmembrane" amino acids 29 to 50 (22 residues), see Phobius details amino acids 437 to 460 (24 residues), see Phobius details PF02706: Wzz" amino acids 12 to 104 (93 residues), 46.5 bits, see alignment E=1.9e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1239)

Predicted SEED Role

"lipopolysaccharide biosynthesis"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJC4 at UniProt or InterPro

Protein Sequence (753 amino acids)

>Atu1239 exopolysaccharide production protein (Agrobacterium fabrum C58)
MNGDRIDDRDVDIDLAQLVAAIWRRRGRIAAITLLSGGAAFVAASMMSPAYKGEARVLIE
SRAASFGASQQSNAPAEPVLDELTVSSQVQILQSVDLIKQVAKDMKLYELDEFDPEAHPS
FVSQLLVGVGLKKDPLQVLPEERVLTAFREKLQVYQVESSRVITVEFSSKDPKLAAAIPN
EMMKAYIALQSGAKLGTSTEAARWLEPEIASLREKVRDADRKVADYRASSDLLSAGQGET
LATRQLSDISTELGRIRGERANAEARAEGVRNALASGRALDTFPDVVASPTIQRLKENET
SIRSQISDLTSSLLEGHPRIRALRNQLAGIERQIQEETRKVLASLENEANLSRLRERQLV
QQLNVLKSESVRAGEQQVGLNDLEREASAQRQLLETYLARYREATSRAGSVDSTPADARV
ISAAVEPREPYFPKTGAITIVVTLAAFLLSCIVVMLVELFTGRALKPVGRSQVPPLSDPP
PTRARVETDGATDVPEQPVTARHEAIQPAPQAIPVAAHHKVAEEERQMPVAAMAAIPALP
KEEVVTAQEVAAEEDVDTSDDFSIDAVAGFLTTRLAKPVAAVVSPAGDSGSTSTVMLARA
LSEMGRSVVLVDMTASGCPTRLMAPEAGLPGVMDLLAGAAAFGETIHGDRLSDAHIVPRG
NAQPREAMRAIDRLTMILSALSDAYDTVLVECGAVQIASLEKMLRNLPAEIIVSVPGRDG
EMLEKTLDDLVAQGYKQALPMTGMRKPDHLSAA