Protein Info for Atu1227 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 125 to 128 (4 residues), see Phobius details amino acids 131 to 155 (25 residues), see Phobius details amino acids 173 to 194 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1227)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CZP9 at UniProt or InterPro

Protein Sequence (195 amino acids)

>Atu1227 hypothetical protein (Agrobacterium fabrum C58)
MLKNIYAWTMALAARKTAVWWLAIVAFVESSVFVVPADVLFLPMVLAKPKKAMFYALVAT
VASVLGGIAGWFLGHYAFESIARPILEFYGKLDSFEQLKNSVNYETIVLLLVTSGLAHLP
PIKVVTILSGAANISLGLFILSAIVARGARFFILAGLLQRYGESVRHFIEKRLGAITAAA
AAALIAIYAVYVFVR