Protein Info for Atu1216 in Agrobacterium fabrum C58

Annotation: alanyl-tRNA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 PF01411: tRNA-synt_2c" amino acids 24 to 96 (73 residues), 37.2 bits, see alignment E=1.4e-13 PF07973: tRNA_SAD" amino acids 189 to 234 (46 residues), 42.3 bits, see alignment 5.9e-15

Best Hits

KEGG orthology group: K07050, (no description) (inferred from 100% identity to atu:Atu1216)

Predicted SEED Role

"Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJD1 at UniProt or InterPro

Protein Sequence (245 amino acids)

>Atu1216 alanyl-tRNA synthetase (Agrobacterium fabrum C58)
MPVNALFRDDFYLSTAEAIVTAVHEDGGIELDQTCFYATSGGQPGDSGFLERADGSRIEL
GVTKNGADKSVIVHVPLEGQPSPEIGEKLTLHVDWPRRYKLMRMHTACHLLSVVCQWPIT
GAAVGEDESRVDFDMSETIEKDEVTAKLMELVKANHPVFLQWISDEELQANPGIVKSKNV
RPPMGLGRVSLVCIGENSSIDSQPCGGTHVSETQEVGDIHIAKIEKKGKENRRFRIRFGA
PEAAA