Protein Info for Atu1099 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 transmembrane" amino acids 53 to 78 (26 residues), see Phobius details PF02618: YceG" amino acids 94 to 372 (279 residues), 288.8 bits, see alignment E=2.4e-90 TIGR00247: conserved hypothetical protein, YceG family" amino acids 197 to 375 (179 residues), 201 bits, see alignment E=1.4e-63

Best Hits

KEGG orthology group: K07082, UPF0755 protein (inferred from 100% identity to atu:Atu1099)

Predicted SEED Role

"FIG004453: protein YceG like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CZZ6 at UniProt or InterPro

Protein Sequence (406 amino acids)

>Atu1099 hypothetical protein (Agrobacterium fabrum C58)
MSDTNQNSQGPSGQNGAGEGNRGPIIPKSPTEALRPEKVPAPPKRSRKAHGQLVIFLNFL
MTLAVAVCVLAIAAFYYMINAFQEPGPLETNTHFTVRNGAGLIEIANNLERNDIISNARV
FRLMTGSYLQKDQTLKTGEYEIKAGASMKDIMLLLESGKSILYSVSLPEGLTVKQMFARL
AADEVLDGELPATLPPEGSLRPDTYRFTRGTKREEIISQMSAAQDKLIDMVWERRDPDLP
IKTIEEFVTLASIVEKETGKDDERAHVASVFYNRLKKGMRLQSDPTIIYGLFGGDGKPSD
RPIYQSDLQKQTPFNTYVIKGLPPSPIANPGRAALEAVANPWRTDDLYFVADGTGGHVFA
KTLEEHNANVRRWRKIEAEKAASGGNPDVVVDGQPGGAEAEKPANN