Protein Info for Atu1044 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 882 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 90 to 107 (18 residues), see Phobius details amino acids 119 to 139 (21 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 186 to 215 (30 residues), see Phobius details amino acids 231 to 249 (19 residues), see Phobius details amino acids 256 to 275 (20 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details amino acids 359 to 377 (19 residues), see Phobius details amino acids 383 to 402 (20 residues), see Phobius details amino acids 425 to 447 (23 residues), see Phobius details amino acids 459 to 478 (20 residues), see Phobius details amino acids 489 to 507 (19 residues), see Phobius details amino acids 519 to 535 (17 residues), see Phobius details amino acids 541 to 558 (18 residues), see Phobius details amino acids 565 to 583 (19 residues), see Phobius details amino acids 602 to 620 (19 residues), see Phobius details amino acids 631 to 649 (19 residues), see Phobius details amino acids 668 to 686 (19 residues), see Phobius details amino acids 696 to 716 (21 residues), see Phobius details amino acids 729 to 751 (23 residues), see Phobius details amino acids 760 to 780 (21 residues), see Phobius details amino acids 800 to 818 (19 residues), see Phobius details amino acids 826 to 845 (20 residues), see Phobius details amino acids 853 to 872 (20 residues), see Phobius details PF10101: DUF2339" amino acids 87 to 874 (788 residues), 555 bits, see alignment E=1.7e-170

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1044)

Predicted SEED Role

"FIG01074088: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJK1 at UniProt or InterPro

Protein Sequence (882 amino acids)

>Atu1044 hypothetical protein (Agrobacterium fabrum C58)
MAAGVVAPAMTQAEGAEAAEKPDFSAEAESEAAPEATAFQAEEASEPGETVATAAPEEVA
REEAQPAPAAAIVETPAAKESFESLLGARWAVWAGGLALALGGIFLVKYSIESGLLSPAV
RLSLAAIFGLVLGLAGEAIRRKAVPGIATAYSNAMIPGVLTAAGALTLFGVVYAAYGIYD
YIGSGTAFILLGLVAFATIGLSLLHGQALAGLGLLGSMLTPALISSEKPNIWALFVFLTI
SWLATAAAARRQGWTVVPSLANAGIGLWALGYIGFSDTISAEPPTLALLVMLAGTIFLWP
GKQLDTPPAQVAETAASERRAVRIMRLLLRPSLAINLTVSMAVILPAIGFLFAEGSVDTH
PALIVSALIAALAALGAARHYAVWPAIIAALGAQTAVSLMSRQGIDFIGLINDTGVTLPP
VGTGYTAEIAMALGLGVILVLCAFSFLKRKGAEDADFAQLWAGIAALFPVWLATASFVEY
GNLGRDWLHAAYGLGLGFVLLAGAEWLHRQNDEAYRKPLNILVLGSFAAFALSLHTLTEG
LVTTVLLSVIGFAYVLASRYRKWEVLPWVMAVASVAVLGRIAWEPTIVGPQNLGTTPVFN
ALLPGYGIPALLAVASAWLLRDWPGVRAKNFLQAIASVMGLLAVAILIRHAMNGGTLDNS
VPTLGEQSIYTLLTIGFSGVLMTLDLKSPSPVFRYGSMIAGVIAVINVLTMHFFTLNPYF
TGENTGRIPVLNLLLIGYLLPALAYGGLAYYARGKRPPPYVSMLAVAGAALGFAWATLSV
RRFWQGENIADWKGFMQGETYSYSVVWLLIGVLLLVLGSRFNARSLRLASAAFVLISVAK
AFLIDMSNLEGVLRALSFIGLGAVLIGIGLFYQKILTRKPQA