Protein Info for Atu1021 in Agrobacterium fabrum C58

Annotation: outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF02530: Porin_2" amino acids 24 to 353 (330 residues), 372.1 bits, see alignment E=1.8e-115

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu1021)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJK9 at UniProt or InterPro

Protein Sequence (365 amino acids)

>Atu1021 outer membrane protein (Agrobacterium fabrum C58)
MNIKSLLIGSAAALAAVSGAHAADAIVAAEPEPLEYVRVCDAFGTGFFYIPGTETCLKFS
GYVRFQTNFGRDQSGTSDWNSFTRAQFNVDTRTDTELGALRGFIEFRADAGNGQSSSSGL
EARQAFIELGGLRVGKFYSWWDDDLSGETDLLSSNTLFNSIRYTYDTGSFWAGISVDELE
GTGSQFATITGAADPVTGLFPLSQEPDNNVGITAGVGGKFGAATLQLIGSYDVDQEEGAI
RAMVFADIGPGTLGLAGVWASGPNAYYALSEWTVAAEYAIKATDRLTITPAVQYLGNVGD
KITVVNTGATAIVSNDWSNRDAWTAGATIDYKITDGLSTKITANYYDEDGQDDQVTGFVR
LQRDF