Protein Info for Atu1000 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 48 to 67 (20 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 110 to 129 (20 residues), see Phobius details amino acids 135 to 155 (21 residues), see Phobius details amino acids 177 to 201 (25 residues), see Phobius details amino acids 207 to 229 (23 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details amino acids 266 to 286 (21 residues), see Phobius details amino acids 307 to 329 (23 residues), see Phobius details amino acids 335 to 354 (20 residues), see Phobius details PF07690: MFS_1" amino acids 2 to 238 (237 residues), 119.5 bits, see alignment E=1.6e-38 amino acids 211 to 354 (144 residues), 39.2 bits, see alignment E=4.3e-14 PF00083: Sugar_tr" amino acids 16 to 155 (140 residues), 35.8 bits, see alignment E=4.5e-13

Best Hits

Swiss-Prot: 38% identical to YDHP_ECOLI: Inner membrane transport protein YdhP (ydhP) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to atu:Atu1000)

Predicted SEED Role

"MFS transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D062 at UniProt or InterPro

Protein Sequence (361 amino acids)

>Atu1000 MFS permease (Agrobacterium fabrum C58)
MGLLPDVATTYGVTVPQAGYVITAYALGVVIGAPIIAVLAARITRRTLLLGLMGLFAAGN
ILSALAPDFLSFTLLRFVTGLPHGAYFGVAALVAASMAPIHKRARAVGRVMLGLTIATLL
GTPLATFFGQLLSWRAAFMLVGGIGLLTVALLWLFQPRDKVEEGASVWRELGAFRRVQVW
LTLAIAAVGFGGMFSVFSYIAKTTTDVAMMPVSTVSMVLALFGIGMNVGNVVGSRLADIS
LNGTIGGMLAFNVLAMTVFGMTADNPFMLCICVFLIGCGFAACPAVQTRLMDVAQDAQTL
AAASNHSAFNIANALGAWLGGLVIAMGFGYASTGYVGAVLSLLGLGVFLVSVTVERRAKA
G