Protein Info for Atu0991 in Agrobacterium fabrum C58

Annotation: cation efflux system component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 transmembrane" amino acids 9 to 32 (24 residues), see Phobius details amino acids 39 to 62 (24 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 116 to 136 (21 residues), see Phobius details amino acids 156 to 176 (21 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details PF01545: Cation_efflux" amino acids 8 to 216 (209 residues), 115 bits, see alignment E=2e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0991)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJM1 at UniProt or InterPro

Protein Sequence (306 amino acids)

>Atu0991 cation efflux system component (Agrobacterium fabrum C58)
MTEQSLLKFSIAVTVVLALFGIGAGLFSGSFAVVFDGVYALTDAFMTVLALLVARLIAAS
AAPRPGGRLAERFTMGFWHLEPMVLGLNGTLLMGAAIYALINAIDSLMDGGRSIEFDYAI
IVTFVSFTVSLAMAWFVKRQNRRLKSAFVALDAKSWLMSALLSMALFVAFAIGYGLTGTS
QAWLAPYIDPAVLALVCLVIIPMPLGNVKQALADILLVTPLEFKQHVDGVAGEIVTKFGF
ASHYSYVARVGRGRQIELFFIVPKNWPARRLEEWDAIRDEIGNALGGEGSDRWLTIVFTT
DEEWAV