Protein Info for Atu0988 in Agrobacterium fabrum C58
Annotation: molecular chaperone, Hsp70 family
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K04046, hypothetical chaperone protein (inferred from 100% identity to atu:Atu0988)Predicted SEED Role
"Putative heat shock protein YegD" in subsystem ZZ gjo need homes
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q7D073 at UniProt or InterPro
Protein Sequence (432 amino acids)
>Atu0988 molecular chaperone, Hsp70 family (Agrobacterium fabrum C58) MTQKRALGLDFGTTNTVMALSDTGSASHSMRFTSSAGTDDSMRTALSFMKDAGLGAAALH VEAGQAAIRQFIDNAGDCRFLQSIKTFAASPLFQGTLIFAKRQSFEDLMEVFLRKLKTYA GSEWPGDVSTVIAGRPVRFAGSNPDETLALARYNEALTRAGFPEIHYVYEPVAAAYYFAQ SLKKDANVLVADFGGGTTDYSLIRFETHAGKLSATPIGHSGVGVAGDHFDFRMIDNLVSP EIGKGSKFKSFDKVLDVPSGYYVNFGRWNQLSIFKTSKEFTDLKSLVRSALEPDKLELFI DLVEHDEGYPLYQAISATKMALSSAQEAEFNFSPLGKAGRKMVKRSDFNNWIADDLAKIE GALDEVLEKTKVAPEAIDKVFLTGGTSFVPAVRELFTRRFDADRIESGGELLSIAHGLAM IGESGDIQRWTA